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zcchc17 zinc finger, CCHC domain containing 17 [ Rhincodon typus (whale shark) ]

Gene ID: 109917946, updated on 14-Mar-2024

Summary

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Gene symbol
zcchc17
Gene description
zinc finger, CCHC domain containing 17
See related
EnsemblRapid:ENSRTYG00015014038
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhincodon typus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 35
Exon count:
10
Annotation release Status Assembly Chr Location
101 current sRhiTyp1.1 (GCF_021869965.1) 35 NC_063366.1 (20338806..20354283)
100 previous assembly ASM164234v2 (GCF_001642345.1) Unplaced Scaffold NW_018037440.1 (1689..5872, complement)

Chromosome 35 - NC_063366.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM58-like Neighboring gene zinc-binding protein A33-like Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene olfactomedin-like protein 2A Neighboring gene cyclic AMP-dependent transcription factor ATF-6 beta-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar protein of 40 kDa
Names
zinc finger CCHC-type containing 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sRhiTyp1.1

Genomic

  1. NC_063366.1 Reference sRhiTyp1.1

    Range
    20338806..20354283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048616596.1 → XP_048472553.1  nucleolar protein of 40 kDa isoform X2

  2. XM_048616599.1 → XP_048472556.1  nucleolar protein of 40 kDa isoform X3

  3. XM_048616593.1 → XP_048472550.1  nucleolar protein of 40 kDa isoform X2

  4. XM_048616595.1 → XP_048472552.1  nucleolar protein of 40 kDa isoform X2

  5. XM_048616598.1 → XP_048472555.1  nucleolar protein of 40 kDa isoform X2

  6. XM_048616592.1 → XP_048472549.1  nucleolar protein of 40 kDa isoform X1

  7. XM_048616590.1 → XP_048472547.1  nucleolar protein of 40 kDa isoform X1

  8. XM_048616591.1 → XP_048472548.1  nucleolar protein of 40 kDa isoform X1

    Related
    ENSRTYP00015021856.1, ENSRTYT00015024252.1

  9. XM_048616594.1 → XP_048472551.1  nucleolar protein of 40 kDa isoform X2

Nucleotide Protein
Heading Accession and Version

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