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LOC109905769 claudin-12 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109905769, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109905769
Gene description
claudin-12
See related
Ensembl:ENSOKIG00005012169
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
cldn12
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Genomic context

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Location:
chromosome: LG2
Exon count:
3
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG2 NC_034175.2 (1562566..1566332, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG2 NC_034175.1 (2158221..2161063, complement)

Linkage Group LG2 - NC_034175.2Genomic Context describing neighboring genes Neighboring gene protein DBF4 homolog A Neighboring gene disintegrin and metalloproteinase domain-containing protein 22 Neighboring gene disintegrin and metalloproteinase domain-containing protein 22-like Neighboring gene GTP-binding protein 10-like Neighboring gene oxidative stress-induced growth inhibitor 2-like Neighboring gene nibrin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034175.2 Reference Okis_V2 Primary Assembly

    Range
    1562566..1566332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031836943.1 → XP_031692803.1  claudin-12

    UniProtKB/TrEMBL
    A0A8C7FH42
    Conserved Domains (1) summary
    PRK10263
    Location:205 → 311
    PRK10263; DNA translocase FtsK; Provisional

  2. XM_020503340.2 → XP_020358929.2  claudin-12

    UniProtKB/TrEMBL
    A0A8C7FH42
    Related
    ENSOKIP00005028055.1, ENSOKIT00005029704.1
    Conserved Domains (1) summary
    PRK10263
    Location:205 → 311
    PRK10263; DNA translocase FtsK; Provisional
Nucleotide Protein
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Gene LinkOut

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