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elac2 elaC ribonuclease Z 2 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109898689, updated on 14-Mar-2024

Summary

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Gene symbol
elac2
Gene description
elaC ribonuclease Z 2
See related
Ensembl:ENSOKIG00005019702
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG10
Exon count:
24
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG10 NC_034183.2 (64376617..64385254, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG10 NC_034183.1 (62838007..62846655, complement)

Linkage Group LG10 - NC_034183.2Genomic Context describing neighboring genes Neighboring gene phosphoinositide-interacting protein-like Neighboring gene protein shisa-6-like Neighboring gene dual specificity mitogen-activated protein kinase kinase 4-like Neighboring gene protein SCO1 homolog, mitochondrial Neighboring gene transmembrane protein 220

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-tRNA processing endoribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial tRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc phosphodiesterase ELAC protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034183.2 Reference Okis_V2 Primary Assembly

    Range
    64376617..64385254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020493771.2 → XP_020349360.2  zinc phosphodiesterase ELAC protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C7MED0
    Related
    ENSOKIP00005047573.1, ENSOKIT00005050162.1
    Conserved Domains (2) summary
    cd07718
    Location:479 → 684
    RNaseZ_ELAC1_ELAC2-C-term-like_MBL-fold; Ribonuclease Z ELAC1, C-terminus of ELAC2, and related proteins; MBL-fold metallo-hydrolase domain
    cl23716
    Location:47 → 305
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

  2. XM_020493770.2 → XP_020349359.2  zinc phosphodiesterase ELAC protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C7GYI8, A0A8C7MED0
    Related
    ENSOKIP00005048032.1, ENSOKIT00005050645.1
    Conserved Domains (2) summary
    cd07718
    Location:521 → 726
    RNaseZ_ELAC1_ELAC2-C-term-like_MBL-fold; Ribonuclease Z ELAC1, C-terminus of ELAC2, and related proteins; MBL-fold metallo-hydrolase domain
    cl23716
    Location:89 → 347
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
Nucleotide Protein
Heading Accession and Version

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