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LOC109892961 prolyl 4-hydroxylase subunit alpha-2 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109892961, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109892961
Gene description
prolyl 4-hydroxylase subunit alpha-2
See related
Ensembl:ENSOKIG00005048507
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
p4ha2
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Genomic context

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Location:
chromosome: LG6
Exon count:
16
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG6 NC_034179.2 (51621812..51653959)
100 previous assembly Okis_V1 (GCF_002021735.1) LG6 NC_034179.1 (45798555..45830846)

Linkage Group LG6 - NC_034179.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 4-like Neighboring gene PDZ and LIM domain protein 4-like Neighboring gene prolyl 4-hydroxylase subunit alpha-1-like Neighboring gene sodium- and chloride-dependent GABA transporter 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 4-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 4-hydroxylase subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034179.2 Reference Okis_V2 Primary Assembly

    Range
    51621812..51653959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020485889.2 → XP_020341478.1  prolyl 4-hydroxylase subunit alpha-2 isoform X3

    UniProtKB/TrEMBL
    A0A8C7N9B4
    Conserved Domains (2) summary
    smart00702
    Location:349 → 540
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    pfam08336
    Location:27 → 156
    P4Ha_N; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region

  2. XM_020485888.2 → XP_020341477.1  prolyl 4-hydroxylase subunit alpha-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C7N9B4
    Related
    ENSOKIP00005111625.1, ENSOKIT00005119503.1
    Conserved Domains (2) summary
    smart00702
    Location:349 → 518
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    pfam08336
    Location:27 → 156
    P4Ha_N; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region

  3. XM_020485887.2 → XP_020341476.1  prolyl 4-hydroxylase subunit alpha-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C7LFW6, A0A8C7N9B4
    Related
    ENSOKIP00005111560.1, ENSOKIT00005119438.1
    Conserved Domains (2) summary
    smart00702
    Location:349 → 522
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    pfam08336
    Location:27 → 156
    P4Ha_N; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
Nucleotide Protein
Heading Accession and Version

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