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LOC109873458 PRKR interacting protein 1 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109873458, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109873458
Gene description
PRKR interacting protein 1
See related
Ensembl:ENSOKIG00005047346
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
prkrip1
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Genomic context

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Location:
chromosome: LG28
Exon count:
7
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG28 NC_034201.2 (26248223..26256548)
100 previous assembly Okis_V1 (GCF_002021735.1) LG28 NC_034201.1 (21941109..21950053, complement)

Linkage Group LG28 - NC_034201.2Genomic Context describing neighboring genes Neighboring gene rab GTPase-binding effector protein 1-like Neighboring gene uncharacterized LOC116358112 Neighboring gene VPS37D subunit of ESCRT-I Neighboring gene uroplakin-3b Neighboring gene proteasome (prosome, macropain) assembly chaperone 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PRKR-interacting protein 1
Names
PRKR interacting protein 1 (IL11 inducible)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034201.2 Reference Okis_V2 Primary Assembly

    Range
    26248223..26256548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031807810.1 → XP_031663670.1  PRKR-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7KU39
    Related
    ENSOKIP00005108063.1, ENSOKIT00005115795.1
    Conserved Domains (1) summary
    pfam06658
    Location:43 → 174
    DUF1168; Protein of unknown function (DUF1168)

  2. XM_031807809.1 → XP_031663669.1  PRKR-interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7KYL9
    Related
    ENSOKIP00005108072.1, ENSOKIT00005115804.1
    Conserved Domains (1) summary
    pfam06658
    Location:43 → 151
    DUF1168; Protein of unknown function (DUF1168)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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