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Prpf40a pre-mRNA processing factor 40 homolog A [ Castor canadensis (American beaver) ]

Gene ID: 109696514, updated on 14-Mar-2024

Summary

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Gene symbol
Prpf40a
Gene description
pre-mRNA processing factor 40 homolog A
See related
Ensembl:ENSCCNG00000021075
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017871843.1 (93538..138792)

NW_017871843.1Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor like GTPase 6 interacting protein 6 Neighboring gene formin like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017871843.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing factor 40 homolog A
Names
pre-mRNA-processing factor 40 A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017871843.1 Reference C.can genome v1.0

    Range
    93538..138792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020179584.1 → XP_020035173.1  pre-mRNA-processing factor 40 homolog A isoform X2

    UniProtKB/TrEMBL
    A0A250Y6C6, A0A8B7VU65
    Related
    ENSCCNP00000021263.1, ENSCCNT00000027375.1
    Conserved Domains (2) summary
    smart00441
    Location:820 → 874
    FF; Contains two conserved F residues
    cl00157
    Location:207 → 757
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...

  2. XM_020179585.1 → XP_020035174.1  pre-mRNA-processing factor 40 homolog A isoform X3

    UniProtKB/TrEMBL
    A0A250Y6C6, A0A8B7VV38
    Conserved Domains (2) summary
    smart00441
    Location:778 → 832
    FF; Contains two conserved F residues
    cl00157
    Location:165 → 715
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...

  3. XM_020179583.1 → XP_020035172.1  pre-mRNA-processing factor 40 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A250Y6C6, A0A8B7VU47
    Conserved Domains (2) summary
    smart00441
    Location:824 → 878
    FF; Contains two conserved F residues
    cl00157
    Location:207 → 761
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
Nucleotide Protein
Heading Accession and Version

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