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Lgi1 leucine rich glioma inactivated 1 [ Castor canadensis (American beaver) ]

Gene ID: 109689972, updated on 14-Mar-2024

Summary

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Gene symbol
Lgi1
Gene description
leucine rich glioma inactivated 1
See related
Ensembl:ENSCCNG00000019865
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870954.1 (140626..157798, complement)

NW_017870954.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109689970 Neighboring gene protein FRA10AC1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017870954.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich glioma-inactivated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017870954.1 Reference C.can genome v1.0

    Range
    140626..157798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020169057.1 → XP_020024646.1  leucine-rich glioma-inactivated protein 1

    UniProtKB/TrEMBL
    A0A8B7UY83
    Related
    ENSCCNP00000019818.1, ENSCCNT00000025652.1
    Conserved Domains (4) summary
    TIGR00864
    Location:37 → 112
    PCC; polycystin cation channel protein
    sd00031
    Location:32 → 55
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:401 → 441
    EPTP; EPTP domain
    pfam13855
    Location:13 → 66
    LRR_8; Leucine rich repeat
Nucleotide Protein
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