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Psmc6 proteasome 26S subunit, ATPase 6 [ Castor canadensis (American beaver) ]

Gene ID: 109683953, updated on 14-Mar-2024

Summary

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Gene symbol
Psmc6
Gene description
proteasome 26S subunit, ATPase 6
See related
Ensembl:ENSCCNG00000011507
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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See Psmc6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870175.1 (339784..361137, complement)

NW_017870175.1Genomic Context describing neighboring genes Neighboring gene glucosamine-phosphate N-acetyltransferase 1 Neighboring gene serine/threonine/tyrosine interacting protein Neighboring gene endoplasmic reticulum oxidoreductase 1 alpha Neighboring gene G protein-coupled receptor 137C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017870175.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome-activating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of RNA polymerase II transcription preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic proteasome complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S protease regulatory subunit 10B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017870175.1 Reference C.can genome v1.0

    Range
    339784..361137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020160058.1 → XP_020015647.1  26S protease regulatory subunit 10B

    UniProtKB/TrEMBL
    A0A8B7U8R6
    Related
    ENSCCNP00000011119.1, ENSCCNT00000014556.1
    Conserved Domains (1) summary
    COG1222
    Location:18 → 401
    RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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