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upf2 UPF2 regulator of nonsense mediated mRNA decay [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109640715, updated on 14-Mar-2024

Summary

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Gene symbol
upf2
Gene description
UPF2 regulator of nonsense mediated mRNA decay
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859754.1 (360368..374240)

NW_017859754.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 9 Neighboring gene solute carrier family 35 member E3 Neighboring gene proline and serine rich 2 Neighboring gene RAB3A interacting protein (rabin3)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859754.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts 2
Names
UPF2 regulator of nonsense transcripts homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859754.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    360368..374240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020104868.1 → XP_019960427.1  regulator of nonsense transcripts 2 isoform X5

    Conserved Domains (3) summary
    smart00543
    Location:570 → 757
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:775 → 985
    MIF4G; MIF4G domain
    pfam04050
    Location:1099 → 1224
    Upf2; Up-frameshift suppressor 2

  2. XM_020104867.1 → XP_019960426.1  regulator of nonsense transcripts 2 isoform X5

    Conserved Domains (3) summary
    smart00543
    Location:570 → 757
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:775 → 985
    MIF4G; MIF4G domain
    pfam04050
    Location:1099 → 1224
    Upf2; Up-frameshift suppressor 2

  3. XM_020104870.1 → XP_019960429.1  regulator of nonsense transcripts 2 isoform X5

    Conserved Domains (3) summary
    smart00543
    Location:570 → 757
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:775 → 985
    MIF4G; MIF4G domain
    pfam04050
    Location:1099 → 1224
    Upf2; Up-frameshift suppressor 2

  4. XM_020104862.1 → XP_019960421.1  regulator of nonsense transcripts 2 isoform X1

    Conserved Domains (3) summary
    smart00543
    Location:587 → 774
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:792 → 1002
    MIF4G; MIF4G domain
    pfam04050
    Location:1116 → 1241
    Upf2; Up-frameshift suppressor 2

  5. XM_020104863.1 → XP_019960422.1  regulator of nonsense transcripts 2 isoform X1

    Conserved Domains (3) summary
    smart00543
    Location:587 → 774
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:792 → 1002
    MIF4G; MIF4G domain
    pfam04050
    Location:1116 → 1241
    Upf2; Up-frameshift suppressor 2

  6. XM_020104864.1 → XP_019960423.1  regulator of nonsense transcripts 2 isoform X2

    Conserved Domains (3) summary
    smart00543
    Location:587 → 774
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:792 → 1002
    MIF4G; MIF4G domain
    pfam04050
    Location:1116 → 1241
    Upf2; Up-frameshift suppressor 2

  7. XM_020104865.1 → XP_019960424.1  regulator of nonsense transcripts 2 isoform X3

    Conserved Domains (3) summary
    smart00543
    Location:587 → 774
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:792 → 1002
    MIF4G; MIF4G domain
    pfam04050
    Location:1116 → 1241
    Upf2; Up-frameshift suppressor 2

  8. XM_020104866.1 → XP_019960425.1  regulator of nonsense transcripts 2 isoform X4

    Conserved Domains (3) summary
    smart00543
    Location:587 → 774
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam02854
    Location:792 → 1002
    MIF4G; MIF4G domain
    pfam04050
    Location:1116 → 1241
    Upf2; Up-frameshift suppressor 2
Nucleotide Protein
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