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mbd4 methyl-CpG binding domain protein 4 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109635087, updated on 14-Mar-2024

Summary

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Gene symbol
mbd4
Gene description
methyl-CpG binding domain protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859666.1 (4645819..4648570, complement)

NW_017859666.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109635123 Neighboring gene cysteine rich with EGF like domains 1 Neighboring gene intraflagellar transport 122 homolog (Chlamydomonas) Neighboring gene uncharacterized LOC109635028

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859666.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyrimidine-specific mismatch base pair DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methyl-CpG-binding domain protein 4
Names
methyl-CpG binding domain 4, DNA glycosylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859666.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    4645819..4648570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020096002.1 → XP_019951561.1  methyl-CpG-binding domain protein 4

    Conserved Domains (2) summary
    cd01396
    Location:15 → 80
    MeCP2_MBD; MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding ...
    cl27658
    Location:335 → 400
    HHH; Helix-hairpin-helix motif
Nucleotide Protein
Heading Accession and Version

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