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rnf6 ring finger protein (C3H2C3 type) 6 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109629768, updated on 14-Mar-2024

Summary

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Gene symbol
rnf6
Gene description
ring finger protein (C3H2C3 type) 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859653.1 (9320265..9325191)

NW_017859653.1Genomic Context describing neighboring genes Neighboring gene WASP family member 3b Neighboring gene cyclin-dependent kinase 8 Neighboring gene ATPase phospholipid transporting 8A2 Neighboring gene BOC cell adhesion associated, oncogene regulated

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859653.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF6
Names
ring finger protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859653.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    9320265..9325191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020087663.1 → XP_019943222.1  E3 ubiquitin-protein ligase RNF6

    Conserved Domains (1) summary
    cd16673
    Location:667 → 711
    RING-H2_RNF6; RING finger, H2 subclass, found in E3 ubiquitin-protein ligase RNF6 and similar proteins
Nucleotide Protein
Heading Accession and Version

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