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csf1ra colony stimulating factor 1 receptor, a [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109626445, updated on 11-Apr-2024

Summary

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Gene symbol
csf1ra
Gene description
colony stimulating factor 1 receptor, a
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Also known as
csf1r
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859641.1 (7144469..7154605, complement)

NW_017859641.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIN-4A Neighboring gene solute carrier family 35 member A4 Neighboring gene HMG box domain containing 3 Neighboring gene platelet-derived growth factor receptor, beta polypeptide Neighboring gene caudal type homeobox 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859641.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Origin of adult-type pigment cells forming the asymmetric pigment pattern, in Japanese flounder (Paralichthys olivaceus). Yamada T, et al. Dev Dyn, 2010 Dec. PMID 20941781
  2. Adult-type pigment cells, which color the ocular sides of flounders at metamorphosis, localize as precursor cells at the proximal parts of the dorsal and anal fins in early larvae. Watanabe K, et al. Dev Growth Differ, 2008 Dec. PMID 19046161

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables macrophage colony-stimulating factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in osteoclast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CSF1-CSF1R complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
macrophage colony-stimulating factor 1 receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859641.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    7144469..7154605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020082430.1 → XP_019937989.1  macrophage colony-stimulating factor 1 receptor isoform X2

    Conserved Domains (4) summary
    smart00409
    Location:33 → 111
    IG; Immunoglobulin
    smart00410
    Location:227 → 308
    IG_like; Immunoglobulin like
    cl11960
    Location:313 → 412
    Ig; Immunoglobulin domain
    cl21453
    Location:551 → 923
    PKc_like; Protein Kinases, catalytic domain

  2. XM_020082410.1 → XP_019937969.1  macrophage colony-stimulating factor 1 receptor isoform X1

    Conserved Domains (4) summary
    smart00409
    Location:34 → 112
    IG; Immunoglobulin
    smart00410
    Location:228 → 309
    IG_like; Immunoglobulin like
    cl11960
    Location:314 → 413
    Ig; Immunoglobulin domain
    cl21453
    Location:552 → 924
    PKc_like; Protein Kinases, catalytic domain

  3. XM_020082422.1 → XP_019937981.1  macrophage colony-stimulating factor 1 receptor isoform X1

    Conserved Domains (4) summary
    smart00409
    Location:34 → 112
    IG; Immunoglobulin
    smart00410
    Location:228 → 309
    IG_like; Immunoglobulin like
    cl11960
    Location:314 → 413
    Ig; Immunoglobulin domain
    cl21453
    Location:552 → 924
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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