U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GATA6 GATA binding protein 6 [ Bos indicus (zebu cattle) ]

Gene ID: 109577657, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
GATA6
Gene description
GATA binding protein 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 24
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 24 NC_032673.1 (35286249..35316756, complement)

Chromosome 24 - NC_032673.1Genomic Context describing neighboring genes Neighboring gene RB binding protein 8, endonuclease Neighboring gene uncharacterized LOC109577729 Neighboring gene uncharacterized LOC109577986 Neighboring gene uncharacterized LOC109577987 Neighboring gene small nuclear ribonucleoprotein E pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_032673.1 Chromosome 24 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in epithelial cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: transcription factor GATA-6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032673.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    35286249..35316756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019986419.1 → XP_019841978.1  LOW QUALITY PROTEIN: transcription factor GATA-6

    UniProtKB/TrEMBL
    A0A6P5DUF3
    Conserved Domains (3) summary
    cd00202
    Location:290 → 341
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:181 → 224
    GATA-N; GATA-type transcription activator, N-terminal
    cl26386
    Location:6 → 223
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.