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RIGI RNA sensor RIG-I [ Bos indicus (zebu cattle) ]

Gene ID: 109562815, updated on 14-Mar-2024

Summary

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Gene symbol
RIGI
Gene description
RNA sensor RIG-I
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
DDX58
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 8 NC_032657.1 (11648952..11694259)

Chromosome 8 - NC_032657.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109562817 Neighboring gene NADH:ubiquinone oxidoreductase subunit B6 Neighboring gene TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase Neighboring gene aconitase 1 Neighboring gene uncharacterized LOC109562820

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032657.1 Chromosome 8 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX58
Names
DExD/H-box helicase 58

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032657.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    11648952..11694259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019965850.1 → XP_019821409.1  probable ATP-dependent RNA helicase DDX58

    UniProtKB/TrEMBL
    A0A6P5C760
    Conserved Domains (4) summary
    cd08817
    Location:100 → 189
    CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
    pfam11648
    Location:811 → 925
    RIG-I_C-RD; C-terminal domain of RIG-I
    cl14633
    Location:2 → 92
    DD; Death Domain Superfamily of protein-protein interaction domains
    cl17041
    Location:239 → 808
    helicase_insert_domain
Nucleotide Protein
Heading Accession and Version

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