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MSX1 msh homeobox 1 [ Bos indicus (zebu cattle) ]

Gene ID: 109560670, updated on 14-Mar-2024

Summary

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Gene symbol
MSX1
Gene description
msh homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 6 NC_032655.1 (108770272..108774582)

Chromosome 6 - NC_032655.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 32B Neighboring gene uncharacterized LOC109560669 Neighboring gene cytokine like 1 Neighboring gene syntaxin 18 Neighboring gene neuronal vesicle trafficking associated 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032655.1 Chromosome 6 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in embryonic morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein MSX-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032655.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    108770272..108774582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019963087.1 → XP_019818646.1  homeobox protein MSX-1

    UniProtKB/TrEMBL
    A0A6P5BZA5
    Conserved Domains (1) summary
    pfam00046
    Location:175 → 228
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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