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pcdh17 protocadherin 17 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109524620, updated on 14-Mar-2024

Summary

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Gene symbol
pcdh17
Gene description
protocadherin 17
See related
Ensembl:ENSHCOG00000002202
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805745.1 (305697..361269)

NW_017805745.1Genomic Context describing neighboring genes Neighboring gene putative E3 ubiquitin-protein ligase RF298 Neighboring gene uncharacterized LOC109524522 Neighboring gene uncharacterized LOC109524621 Neighboring gene uncharacterized LOC109524501 Neighboring gene diaphanous related formin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805745.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805745.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    305697..361269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019884614.1 → XP_019740173.1  protocadherin-17 isoform X2

    Conserved Domains (2) summary
    cd11304
    Location:243 → 343
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:23 → 108
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  2. XM_019884613.1 → XP_019740172.1  protocadherin-17 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3D338
    Related
    ENSHCOP00000001274.1, ENSHCOT00000012384.1
    Conserved Domains (2) summary
    cd11304
    Location:243 → 343
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:23 → 108
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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