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vps4b vacuolar protein sorting 4 homolog B [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109521221, updated on 14-Mar-2024

Summary

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Gene symbol
vps4b
Gene description
vacuolar protein sorting 4 homolog B
See related
Ensembl:ENSHCOG00000003587
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805540.1 (1455130..1467862, complement)

NW_017805540.1Genomic Context describing neighboring genes Neighboring gene BCL2 apoptosis regulator b Neighboring gene apoptosis regulator Bcl-2 pseudogene Neighboring gene 3-ketodihydrosphingosine reductase Neighboring gene uncharacterized LOC109521225 Neighboring gene laminin subunit alpha-3-like Neighboring gene tetratricopeptide repeat protein 39C-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805540.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805540.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    1455130..1467862 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019878920.1 → XP_019734479.1  vacuolar protein sorting-associated protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A3Q2XQQ5
    Conserved Domains (4) summary
    COG0464
    Location:160 → 417
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    cd02678
    Location:75 → 150
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam09336
    Location:443 → 503
    Vps4_C; Vps4 C terminal oligomerization domain
    cl00299
    Location:5 → 79
    MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...

  2. XM_019878921.1 → XP_019734480.1  vacuolar protein sorting-associated protein 4B isoform X2

    UniProtKB/TrEMBL
    A0A3Q2XDI8, A0A3Q2XQQ5
    Related
    ENSHCOP00000002410.1, ENSHCOT00000010454.1
    Conserved Domains (3) summary
    COG0464
    Location:90 → 347
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    cd02678
    Location:5 → 80
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam09336
    Location:373 → 433
    Vps4_C; Vps4 C terminal oligomerization domain
Nucleotide Protein
Heading Accession and Version

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