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snrnp40 small nuclear ribonucleoprotein 40 (U5) [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109518375, updated on 14-Mar-2024

Summary

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Gene symbol
snrnp40
Gene description
small nuclear ribonucleoprotein 40 (U5)
See related
Ensembl:ENSHCOG00000005094
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805452.1 (496399..500391, complement)

NW_017805452.1Genomic Context describing neighboring genes Neighboring gene pumilio RNA-binding family member 1 Neighboring gene sodium/potassium transporting ATPase interacting 1 Neighboring gene zinc finger, CCHC domain containing 17 Neighboring gene fatty acid binding protein 3, muscle and heart

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805452.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U5 small nuclear ribonucleoprotein 40 kDa protein
Names
small nuclear ribonucleoprotein U5 subunit 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805452.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    496399..500391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019874174.1 → XP_019729733.1  U5 small nuclear ribonucleoprotein 40 kDa protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q2XH23
    Related
    ENSHCOP00000003715.1, ENSHCOT00000008275.1
    Conserved Domains (2) summary
    cd00200
    Location:55 → 342
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:61 → 98
    7WD40; WD40 repeat [structural motif]

  2. XM_019874175.1 → XP_019729734.1  U5 small nuclear ribonucleoprotein 40 kDa protein isoform X2

    Conserved Domains (2) summary
    cd00200
    Location:55 → 297
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:61 → 98
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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