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CLIP1 CAP-Gly domain containing linker protein 1 [ Rhinolophus sinicus (Chinese rufous horseshoe bat) ]

Gene ID: 109448525, updated on 30-Mar-2024

Summary

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Gene symbol
CLIP1
Gene description
CAP-Gly domain containing linker protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinolophus sinicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
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Genomic context

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Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
100 current ASM188883v1 (GCF_001888835.1) Unplaced Scaffold NW_017739019.1 (5403080..5504197, complement)

NW_017739019.1Genomic Context describing neighboring genes Neighboring gene diablo IAP-binding mitochondrial protein Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene VPS33A core subunit of CORVET and HOPS complexes Neighboring gene uncharacterized LOC109448528 Neighboring gene zinc finger CCHC-type containing 8 Neighboring gene arginine and serine rich coiled-coil 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017739019.1 Unplaced Scaffold Reference ASM188883v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
CAP-Gly domain-containing linker protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinolophus sinicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM188883v1

Genomic

  1. NW_017739019.1 Reference ASM188883v1

    Range
    5403080..5504197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019733923.1 → XP_019589482.1  CAP-Gly domain-containing linker protein 1 isoform X1

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5022
    Location:1031 → 1356
    COG5022; Myosin heavy chain [General function prediction only]

  2. XM_019733934.1 → XP_019589493.1  CAP-Gly domain-containing linker protein 1 isoform X11

    Conserved Domains (2) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:341 → 1044
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_019733928.1 → XP_019589487.1  CAP-Gly domain-containing linker protein 1 isoform X5

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1159
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5022
    Location:1020 → 1345
    COG5022; Myosin heavy chain [General function prediction only]

  4. XM_019733933.1 → XP_019589492.1  CAP-Gly domain-containing linker protein 1 isoform X10

    Conserved Domains (2) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1055
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_019733922.1 → XP_019589481.1  CAP-Gly domain-containing linker protein 1 isoform X1

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5022
    Location:1031 → 1356
    COG5022; Myosin heavy chain [General function prediction only]

  6. XM_019733931.1 → XP_019589490.1  CAP-Gly domain-containing linker protein 1 isoform X8

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:360 → 1124
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5022
    Location:985 → 1310
    COG5022; Myosin heavy chain [General function prediction only]

  7. XM_019733935.1 → XP_019589494.1  CAP-Gly domain-containing linker protein 1 isoform X12

    Conserved Domains (2) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:341 → 1044
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  8. XM_019733929.1 → XP_019589488.1  CAP-Gly domain-containing linker protein 1 isoform X6

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1159
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02463
    Location:1018 → 1319
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_019733930.1 → XP_019589489.1  CAP-Gly domain-containing linker protein 1 isoform X7

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1135
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5022
    Location:996 → 1321
    COG5022; Myosin heavy chain [General function prediction only]

  10. XM_019733927.1 → XP_019589486.1  CAP-Gly domain-containing linker protein 1 isoform X4

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02463
    Location:1029 → 1330
    SMC_N; RecF/RecN/SMC N terminal domain

  11. XM_019733926.1 → XP_019589485.1  CAP-Gly domain-containing linker protein 1 isoform X3

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5022
    Location:1035 → 1349
    COG5022; Myosin heavy chain [General function prediction only]

  12. XM_019733925.1 → XP_019589484.1  CAP-Gly domain-containing linker protein 1 isoform X2

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG4942
    Location:1099 → 1332
    EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]

  13. XM_019733932.1 → XP_019589491.1  CAP-Gly domain-containing linker protein 1 isoform X9

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:360 → 1124
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02463
    Location:983 → 1284
    SMC_N; RecF/RecN/SMC N terminal domain

  14. XM_019733924.1 → XP_019589483.1  CAP-Gly domain-containing linker protein 1 isoform X1

    Conserved Domains (3) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5022
    Location:1031 → 1356
    COG5022; Myosin heavy chain [General function prediction only]

  15. XM_019733936.1 → XP_019589495.1  CAP-Gly domain-containing linker protein 1 isoform X13

    Conserved Domains (2) summary
    smart01052
    Location:220 → 285
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    COG1196
    Location:358 → 1170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
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