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LIG3 DNA ligase 3 [ Crocodylus porosus (Australian saltwater crocodile) ]

Gene ID: 109316985, updated on 14-Mar-2024

Summary

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Gene symbol
LIG3
Gene description
DNA ligase 3
See related
Ensembl:ENSCPRG00005005479
Gene type
protein coding
RefSeq status
MODEL
Organism
Crocodylus porosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Longirostres; Crocodylidae; Crocodylus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current CroPor_comp1 (GCF_001723895.1) Unplaced Scaffold NW_017728932.1 (322197..346159)

NW_017728932.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109316975 Neighboring gene ring finger and FYVE like domain containing E3 ubiquitin protein ligase Neighboring gene RAD51 paralog D

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017728932.1 Unplaced Scaffold Reference CroPor_comp1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, DNA ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via alternative nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA ligase III-XRCC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crocodylus porosus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CroPor_comp1 Primary Assembly

Genomic

  1. NW_017728932.1 Reference CroPor_comp1 Primary Assembly

    Range
    322197..346159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019545354.1 → XP_019400899.1  DNA ligase 3 isoform X2

    UniProtKB/TrEMBL
    A0A7M4ECM5
    Related
    ENSCPRP00005007702.1, ENSCPRT00005009047.1

  2. XM_019545352.1 → XP_019400897.1  DNA ligase 3 isoform X1

    UniProtKB/TrEMBL
    A0A7M4ECD9, A0A7M4ECM5
    Related
    ENSCPRP00005007715.1, ENSCPRT00005009062.1
Nucleotide Protein
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