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GPC6 glypican 6 [ Panthera pardus (leopard) ]

Gene ID: 109264169, updated on 14-Mar-2024

Summary

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Gene symbol
GPC6
Gene description
glypican 6
See related
Ensembl:ENSPPRG00000002331
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera pardus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current ASM2436296v1 (GCF_024362965.1) Unplaced Scaffold NW_026526654.1 (25133677..26246827, complement)
100 previous assembly PanPar1.0 (GCF_001857705.1) Unplaced Scaffold NW_017619855.1 (17541661..18711231, complement)

NW_026526654.1Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene dopachrome tautomerase Neighboring gene U6 spliceosomal RNA Neighboring gene glypican 5 Neighboring gene uncharacterized LOC109264172

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024362965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2436296v1 Primary Assembly

Genomic

  1. NW_026526654.1 Reference ASM2436296v1 Primary Assembly

    Range
    25133677..26246827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019444088.2 → XP_019299633.1  glypican-6 isoform X1

    UniProtKB/TrEMBL
    A0A9V1FC18
    Conserved Domains (1) summary
    pfam01153
    Location:23 → 558
    Glypican

  2. XM_019444089.2 → XP_019299634.1  glypican-6 isoform X2

    UniProtKB/TrEMBL
    A0A9V1FCI1
    Related
    ENSPPRP00000007078.1
    Conserved Domains (1) summary
    pfam01153
    Location:23 → 548
    Glypican; Glypican
Nucleotide Protein
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Gene LinkOut

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