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LOC109259873 opsin 1, long wave sensitive [ Panthera pardus (leopard) ]

Gene ID: 109259873, updated on 20-Nov-2023

Summary

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Gene symbol
LOC109259873
Gene description
opsin 1, long wave sensitive
See related
Ensembl:ENSPPRG00000005526
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera pardus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Also known as
OPN1LW
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current ASM2436296v1 (GCF_024362965.1) Unplaced Scaffold NW_026526843.1 (1730241..1742720, complement)
100 previous assembly PanPar1.0 (GCF_001857705.1) Unplaced Scaffold NW_017620059.1 (113298..126739, complement)

NW_026526843.1Genomic Context describing neighboring genes Neighboring gene transketolase like 1 Neighboring gene testis expressed 28 Neighboring gene protein SET-like Neighboring gene 10 kDa heat shock protein, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phototransduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-wave-sensitive opsin 1
Names
opsin 1 (cone pigments), long-wave-sensitive

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024362965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2436296v1 Primary Assembly

Genomic

  1. NW_026526843.1 Reference ASM2436296v1 Primary Assembly

    Range
    1730241..1742720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019437758.2 → XP_019293303.1  long-wave-sensitive opsin 1 isoform X1

    UniProtKB/TrEMBL
    A0A9V1F184
    Related
    ENSPPRP00000011772.1
    Conserved Domains (2) summary
    cd14964
    Location:55 → 81
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:42 → 333
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

  2. XM_019437759.2 → XP_019293304.1  long-wave-sensitive opsin 1 isoform X2

    UniProtKB/TrEMBL
    A0A9V1F132
    Conserved Domains (2) summary
    cd14964
    Location:1 → 22
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:1 → 274
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

  3. XM_019437761.2 → XP_019293306.1  long-wave-sensitive opsin 1 isoform X2

    UniProtKB/TrEMBL
    A0A9V1F132
    Conserved Domains (2) summary
    cd14964
    Location:1 → 22
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:1 → 274
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein
Heading Accession and Version

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