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COL5A1 collagen type V alpha 1 chain [ Panthera pardus (leopard) ]

Gene ID: 109258246, updated on 14-Mar-2024

Summary

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Gene symbol
COL5A1
Gene description
collagen type V alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera pardus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
67
Annotation release Status Assembly Chr Location
RS_2023_02 current ASM2436296v1 (GCF_024362965.1) Unplaced Scaffold NW_026526766.1 (90615699..90764393, complement)
100 previous assembly PanPar1.0 (GCF_001857705.1) Unplaced Scaffold NW_017620016.1 (1379164..1530264)

NW_026526766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128778659 Neighboring gene olfactomedin 1 Neighboring gene uncharacterized LOC109258250 Neighboring gene retinoid X receptor alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(V) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024362965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2436296v1 Primary Assembly

Genomic

  1. NW_026526766.1 Reference ASM2436296v1 Primary Assembly

    Range
    90615699..90764393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053908503.1 → XP_053764478.1  collagen alpha-1(V) chain isoform X2

    UniProtKB/TrEMBL
    A0A9W2W143

  2. XM_053908502.1 → XP_053764477.1  collagen alpha-1(V) chain isoform X1

    UniProtKB/TrEMBL
    A0A9W2W0E9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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