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aspC PROBABLE ASPARTATE AMINOTRANSFERASE ASPC (TRANSAMINASE A) (ASPAT) [ Mycobacterium bovis AF2122/97 ]

Gene ID: 1091217, discontinued on 3-Jun-2021
  • This record was discontinued.

Summary

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Gene symbol
aspC
Gene description
PROBABLE ASPARTATE AMINOTRANSFERASE ASPC (TRANSAMINASE A) (ASPAT)
Locus tag
BQ2027_MB0344C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mycobacterium bovis AF2122/97 (isolate: AF2122/97)
Lineage
Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex
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Genomic context

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Location:
chromosome: Mycobacterium_bovis_AF2122/97
Sequence:
Chromosome: Mycobacterium_bovis_AF212297; NC_002945.4 (402903..404192, complement)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002945.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Names
PROBABLE ASPARTATE AMINOTRANSFERASE ASPC (TRANSAMINASE A) (ASPAT)
YP_009357673.1
  • Mb0344c, aspC, len: 429 aa. Equivalent to Rv0337c, len: 429 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 429 aa overlap). Probable aspC, aspartate aminotransferase (transaminase A) (EC 2.6.1.1), equivalent to CAC32019.1|AL583925 probable aspartate aminotransferase from Mycobacterium leprae (437 aa). Also highly similar to many e.g. Q48143|U32823 aspartate aminotransferase (404 aa), FASTA scores: opt: 1646, E(): 0, (57.2% identity in 404 aa overlap). Also some similarity to Rv3565|MTCY06G11.12 from Mycobacterium tuberculosis FASTA score: (27.2% identity in 383 aa overlap). BELONGS TO CLASS-I OF PYRIDOXAL-PHOSPHATE-DEPENDENT AMINOTRANSFERASES. COFACTOR: PYRIDOXAL PHOSPHATE. Protein product from Mb0344c detected using shotgun mass spectrometry and SWATH mass spectrometry. Mb0344c found to be expressed during exponential growth in Sauton's minimal media by RNA-sequencing.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002945.4 Reference assembly

    Range
    402903..404192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009357673.1 PROBABLE ASPARTATE AMINOTRANSFERASE ASPC (TRANSAMINASE A) (ASPAT) [Mycobacterium bovis AF2122/97]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P63499.1

Gene LinkOut

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Molecular Biology Databases