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Tsp_01372 hypothetical protein [ Trichinella spiralis ]

Gene ID: 10911272, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_01372
Gene description
hypothetical protein
Locus tag
Tsp_01372
Gene type
protein coding
RNA name
putative membrane protein
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
5

NW_003526943.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene alkylated DNA repair protein AlkB protein Neighboring gene E3 ubiquitin-protein ligase Neighboring gene palmitoyltransferase ZDHHC2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526943.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Golgi calcium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526943.1 Reference assembly

    Range
    5550783..5552067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003377139.1 → XP_003377187.1  putative membrane protein [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003377187.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0V1C1G2
    Conserved Domains (2) summary
    COG2119
    Location:100 → 319
    Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
    pfam01169
    Location:243 → 311
    UPF0016; Uncharacterized protein family UPF0016
Nucleotide Protein
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