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Tsp_06456 transportin-1 [ Trichinella spiralis ]

Gene ID: 10908888, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_06456
Gene description
transportin-1
Locus tag
Tsp_06456
Gene type
protein coding
RNA name
transportin-1
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
2

NW_003526943.1Genomic Context describing neighboring genes Neighboring gene protamine-2 Neighboring gene arginine kinase Neighboring gene putative tumor necrosis factor receptor superfamily member 6 Neighboring gene arginine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526943.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear import signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
transportin-1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526943.1 Reference assembly

    Range
    10905340..10907660 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003378433.1 → XP_003378481.1  transportin-1 [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003378481.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5SG58
    Conserved Domains (3) summary
    pfam03810
    Location:39 → 106
    IBN_N; Importin-beta N-terminal domain
    pfam08389
    Location:111 → 240
    Xpo1; Exportin 1-like protein
    sd00044
    Location:134 → 162
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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