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Tsp_03285 gastrulation defective protein 1 [ Trichinella spiralis ]

Gene ID: 10908781, updated on 25-Jan-2024

Summary

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Gene symbol
Tsp_03285
Gene description
gastrulation defective protein 1
Locus tag
Tsp_03285
Gene type
protein coding
RNA name
gastrulation defective protein 1
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
13

NW_003526941.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene adenosine deaminase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526941.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA double-strand break processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
gastrulation defective protein 1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526941.1 Reference assembly

    Range
    3600633..3603195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003379581.1 → XP_003379629.1  gastrulation defective protein 1 [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003379629.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0V1B7C6
    Conserved Domains (3) summary
    COG2319
    Location:47 → 430
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:111 → 155
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:108 → 430
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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