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Tsp_09259 ubiquitin carboxyl- hydrolase superfamily [ Trichinella spiralis ]

Gene ID: 10905055, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_09259
Gene description
ubiquitin carboxyl- hydrolase superfamily
Locus tag
Tsp_09259
Gene type
protein coding
RNA name
ubiquitin carboxyl- hydrolase superfamily
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
14

NW_003526944.1Genomic Context describing neighboring genes Neighboring gene putative DNA/RNA non-specific endonuclease Neighboring gene tRNA-Pro Neighboring gene signal peptidase complex subunit 3 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526944.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ubiquitin carboxyl- hydrolase superfamily

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526944.1 Reference assembly

    Range
    5163900..5168373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003375632.1 → XP_003375680.1  ubiquitin carboxyl- hydrolase superfamily [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003375680.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5SKA0
    Conserved Domains (3) summary
    cd02667
    Location:205 → 722
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:205 → 721
    UCH; Ubiquitin carboxyl-terminal hydrolase
    pfam02148
    Location:79 → 142
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
Nucleotide Protein
Heading Accession and Version

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