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Tsp_04253 vacuolar sorting protein 9 domain protein [ Trichinella spiralis ]

Gene ID: 10905001, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_04253
Gene description
vacuolar sorting protein 9 domain protein
Locus tag
Tsp_04253
Gene type
protein coding
RNA name
vacuolar sorting protein 9 domain protein
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
12

NW_003526944.1Genomic Context describing neighboring genes Neighboring gene putative RhoGEF domain protein Neighboring gene ubiquitin carboxyl- hydrolase 14 Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526944.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
vacuolar sorting protein 9 domain protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526944.1 Reference assembly

    Range
    2619786..2628571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003375019.1 → XP_003375067.1  vacuolar sorting protein 9 domain protein [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003375067.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5SII7
    Conserved Domains (2) summary
    pfam02204
    Location:1190 → 1287
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
    cl02569
    Location:85 → 375
    RasGAP; Ras GTPase Activating Domain
Nucleotide Protein
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