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Tsp_00718 ubiquitin fusion degradation protein 1-like protein [ Trichinella spiralis ]

Gene ID: 10903899, updated on 25-Jan-2024

Summary

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Gene symbol
Tsp_00718
Gene description
ubiquitin fusion degradation protein 1-like protein
Locus tag
Tsp_00718
Gene type
protein coding
RNA name
ubiquitin fusion degradation protein 1-like protein
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
16

NW_003526943.1Genomic Context describing neighboring genes Neighboring gene putative ribosomal RNA large subunit methyltransferase J Neighboring gene hypothetical protein Neighboring gene RMD5 protein Neighboring gene triacylglycerol lipase superfamily

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526943.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Arp2/3 protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of VCP-NPL4-UFD1 AAA ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ubiquitin fusion degradation protein 1-like protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526943.1 Reference assembly

    Range
    2620727..2625251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003376414.1 → XP_003376462.1  ubiquitin fusion degradation protein 1-like protein [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003376462.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5SAE0
    Conserved Domains (2) summary
    pfam03152
    Location:211 → 386
    UFD1; Ubiquitin fusion degradation protein UFD1
    pfam04699
    Location:50 → 186
    P16-Arc; ARP2/3 complex 16 kDa subunit (p16-Arc)
Nucleotide Protein
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