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Tsp_07767 eukaryotic translation initiation factor 6 [ Trichinella spiralis ]

Gene ID: 10903685, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_07767
Gene description
eukaryotic translation initiation factor 6
Locus tag
Tsp_07767
Gene type
protein coding
RNA name
eukaryotic translation initiation factor 6
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
2

NW_003526941.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4,5-biphosphate-dependent ARF1 GTPase-activating protein Neighboring gene phosphatidylinositol 4,5-biphosphate-dependent ARF1 GTPase-activating protein Neighboring gene hypothetical protein Neighboring gene core histone H2A/H2B/H3/H4 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526941.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribosomal large subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in assembly of large subunit precursor of preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytosolic ribosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of LSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
eukaryotic translation initiation factor 6

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526941.1 Reference assembly

    Range
    10620410..10621420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003381195.1 → XP_003381243.1  eukaryotic translation initiation factor 6 [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003381243.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5S7S9
    Conserved Domains (1) summary
    cl00241
    Location:1 → 240
    IF6; Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) ...
Nucleotide Protein
Heading Accession and Version

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