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synpo2la synaptopodin 2-like a [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108942665, updated on 14-Mar-2024

Summary

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Gene symbol
synpo2la
Gene description
synaptopodin 2-like a
See related
Ensembl:ENSSFOG00015030583
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
Also known as
synpo2l
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 8 NC_041813.1 (6889396..6903298)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017372260.1 (5929107..5941983, complement)

Chromosome 8 - NC_041813.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 2 Neighboring gene SEC24 homolog C, COPII coat complex component Neighboring gene uncharacterized LOC114911077 Neighboring gene myozenin 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptopodin 2-like protein
Names
synaptopodin 2 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041813.1 Reference fSclFor1.1 Primary Assembly

    Range
    6889396..6903298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029253840.1 → XP_029109673.1  synaptopodin 2-like protein isoform X1

    UniProtKB/TrEMBL
    A0A0P7UV26
    Conserved Domains (3) summary
    PHA03247
    Location:440 → 717
    PHA03247; large tegument protein UL36; Provisional
    PRK12323
    Location:970 → 1054
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional
    cd00992
    Location:3 → 84
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_029253841.1 → XP_029109674.1  synaptopodin 2-like protein isoform X2

    UniProtKB/TrEMBL
    A0A0P7UV26, A0A8C9VB00
    Related
    ENSSFOP00015039234.1, ENSSFOT00015055344.1
    Conserved Domains (3) summary
    PHA03247
    Location:354 → 631
    PHA03247; large tegument protein UL36; Provisional
    PRK12323
    Location:884 → 968
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional
    cd00992
    Location:3 → 84
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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