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LOC108940577 sal-like protein 3 [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108940577, updated on 22-Oct-2023

Summary

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Gene symbol
LOC108940577
Gene description
sal-like protein 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
Also known as
sall3
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Genomic context

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Location:
chromosome: 18
Exon count:
4
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 18 NC_041823.1 (2303595..2319367)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017372153.1 (9010553..9025785, complement)

Chromosome 18 - NC_041823.1Genomic Context describing neighboring genes Neighboring gene myelin basic protein Neighboring gene myelin basic protein-like Neighboring gene galanin receptor 1 Neighboring gene sal-like protein 3 Neighboring gene nuclear factor of activated T-cells, cytoplasmic 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: sal-like protein 3
Names
spalt like transcription factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041823.1 Reference fSclFor1.1 Primary Assembly

    Range
    2303595..2319367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018762822.2 → XP_018618338.2  LOW QUALITY PROTEIN: sal-like protein 3

    UniProtKB/TrEMBL
    A0A0P7TWZ4
    Conserved Domains (4) summary
    COG5048
    Location:435 → 777
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:724 → 744
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1129 → 1149
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:736 → 761
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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