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hlcs holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108936248, updated on 18-Sep-2024

Summary

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Gene symbol
hlcs
Gene description
holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)
See related
Ensembl:ENSSFOG00015012983
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
Orthologs
human zebrafish all
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Genomic context

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See hlcs in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 4 NC_041809.1 (17125335..17161942)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017371926.1 (7890030..7926610, complement)

Chromosome 4 - NC_041809.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class P Neighboring gene ripply transcriptional repressor 3 Neighboring gene SIM bHLH transcription factor 2 Neighboring gene dead end protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables biotin--[biotin carboxyl-carrier protein] ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein modification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
biotin--protein ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041809.1 Reference fSclFor1.1 Primary Assembly

    Range
    17125335..17161942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018755522.2 → XP_018611038.2  biotin--protein ligase isoform X3

    UniProtKB/TrEMBL
    A0A8C9TRN5
    Conserved Domains (1) summary
    COG0340
    Location:495 → 740
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]

  2. XM_018755521.2 → XP_018611037.2  biotin--protein ligase isoform X2

    UniProtKB/TrEMBL
    A0A8C9TRN5
    Conserved Domains (1) summary
    COG0340
    Location:594 → 839
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]

  3. XM_018755520.2 → XP_018611036.2  biotin--protein ligase isoform X1

    UniProtKB/TrEMBL
    A0A8C9RVE5, A0A8C9TRN5
    Related
    ENSSFOP00015020181.2, ENSSFOT00015020414.2
    Conserved Domains (1) summary
    COG0340
    Location:669 → 914
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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