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zc3h12d zinc finger CCCH-type containing 12D [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108929139, updated on 22-Oct-2023

Summary

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Gene symbol
zc3h12d
Gene description
zinc finger CCCH-type containing 12D
See related
Ensembl:ENSSFOG00015030031
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 1 NC_041806.1 (43478116..43486222, complement)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017371616.1 (259259..265710)

Chromosome 1 - NC_041806.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 19 Neighboring gene TGF-beta activated kinase 1 (MAP3K7) binding protein 2 Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 4 Neighboring gene glycoprotein integral membrane 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3'-UTR-mediated mRNA destabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, RNase MRP-dependent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribonuclease ZC3H12D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041806.1 Reference fSclFor1.1 Primary Assembly

    Range
    43478116..43486222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029258832.1 → XP_029114665.1  probable ribonuclease ZC3H12D isoform X3

    Conserved Domains (1) summary
    cd18729
    Location:87 → 217
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins

  2. XM_029258801.1 → XP_029114634.1  probable ribonuclease ZC3H12D isoform X2

    Conserved Domains (1) summary
    cd18729
    Location:197 → 327
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins

  3. XM_029258784.1 → XP_029114617.1  probable ribonuclease ZC3H12D isoform X1

    UniProtKB/TrEMBL
    A0A8C9VXA0
    Related
    ENSSFOP00015066380.1, ENSSFOT00015057713.1
    Conserved Domains (1) summary
    cd18729
    Location:207 → 337
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
Nucleotide Protein
Heading Accession and Version

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