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lig3 ligase III, DNA, ATP-dependent [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108928279, updated on 14-Mar-2024

Summary

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Gene symbol
lig3
Gene description
ligase III, DNA, ATP-dependent
See related
Ensembl:ENSSFOG00015003139
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 25
Exon count:
21
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 25 NC_041830.1 (7494093..7508904, complement)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017371604.1 (1755423..1770175)

Chromosome 25 - NC_041830.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 248 Neighboring gene RAD51 paralog D Neighboring gene transmembrane protein 132E Neighboring gene deltex 2, E3 ubiquitin ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, DNA ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via alternative nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA ligase III-XRCC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041830.1 Reference fSclFor1.1 Primary Assembly

    Range
    7494093..7508904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018742163.2 → XP_018597679.2  DNA ligase 3

    UniProtKB/TrEMBL
    A0A8C9QUV2, A0A8C9QWY4
    Related
    ENSSFOP00015004789.2, ENSSFOT00015004865.2
    Conserved Domains (3) summary
    TIGR00574
    Location:311 → 823
    dnl1; DNA ligase I, ATP-dependent (dnl1)
    pfam00645
    Location:90 → 175
    zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
    pfam16759
    Location:932 → 1003
    LIG3_BRCT; DNA ligase 3 BRCT domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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