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zcchc17 zinc finger, CCHC domain containing 17 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108897763, updated on 10-Apr-2024

Summary

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Gene symbol
zcchc17
Gene description
zinc finger, CCHC domain containing 17
See related
EnsemblRapid:ENSLCAG00010039774
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
7
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG3 NC_066835.1 (10540833..10547530)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365892.1 (926721..931140)

Linkage Group LG3 - NC_066835.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium transporting ATPase interacting 1 Neighboring gene small nuclear ribonucleoprotein 40 (U5) Neighboring gene fatty acid binding protein 3, muscle and heart Neighboring gene doublecortin-like kinase 3 Neighboring gene zinc finger TRAF-type containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar protein of 40 kDa
Names
zinc finger CCHC-type containing 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066835.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    10540833..10547530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018697527.2 → XP_018553043.1  nucleolar protein of 40 kDa

    UniProtKB/TrEMBL
    A0A4W6CXV4
    Related
    ENSLCAP00010017258.1, ENSLCAT00010017624.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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