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sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase [ Lates calcarifer (barramundi perch) ]

Gene ID: 108896853, updated on 10-Apr-2024

Summary

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Gene symbol
sel1l
Gene description
SEL1L adaptor subunit of SYVN1 ubiquitin ligase
See related
EnsemblRapid:ENSLCAG00010019425
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG7_1
Exon count:
21
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG7_1 NC_066839.1 (14583061..14594148)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365808.1 (1624965..1636067)

Linkage Group LG7_1 - NC_066839.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 6 Neighboring gene Rho GTPase activating protein 18 Neighboring gene phospholipase B1, membrane-associated Neighboring gene chromogranin A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein sel-1 homolog 1
Names
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase
SEL1L, ERAD E3 ligase adaptor subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066839.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    14583061..14594148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018696127.2 → XP_018551643.1  protein sel-1 homolog 1

    UniProtKB/TrEMBL
    A0A4W6EUM2, A0A4W6EUN2
    Related
    ENSLCAP00010041735.2, ENSLCAT00010042777.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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