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rfxap regulatory factor X-associated protein [ Lates calcarifer (barramundi perch) ]

Gene ID: 108893716, updated on 10-Apr-2024

Summary

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Gene symbol
rfxap
Gene description
regulatory factor X-associated protein
See related
EnsemblRapid:ENSLCAG00010024629
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG20
Exon count:
4
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG20 NC_066852.1 (21314880..21317806)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365383.1 (17920700..17923083)

Linkage Group LG20 - NC_066852.1Genomic Context describing neighboring genes Neighboring gene bicaudal-D-related protein 2-like Neighboring gene uncharacterized LOC108893718 Neighboring gene uncharacterized LOC108893717 Neighboring gene SMAD family member 9 Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulatory factor X-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066852.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    21314880..21317806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018691987.2 → XP_018547503.1  regulatory factor X-associated protein

    UniProtKB/TrEMBL
    A0A4W6FPG4
    Related
    ENSLCAP00010052933.1, ENSLCAT00010054297.2
Nucleotide Protein
Heading Accession and Version

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