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acsl6 acyl-CoA synthetase long chain family member 6 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108893514, updated on 12-Sep-2024

Summary

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Gene symbol
acsl6
Gene description
acyl-CoA synthetase long chain family member 6
See related
EnsemblRapid:ENSLCAG00010014045
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
zebrafish all
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Genomic context

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See acsl6 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
24
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG20 NC_066852.1 (17047788..17087657, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365383.1 (13653595..13691546, complement)

Linkage Group LG20 - NC_066852.1Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 1b Neighboring gene folliculin interacting protein 1 Neighboring gene uncharacterized LOC108893157 Neighboring gene uncharacterized LOC108893857 Neighboring gene solute carrier family 22 member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty-acyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-chain-fatty-acid--CoA ligase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066852.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    17047788..17087657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051078813.1 → XP_050934770.1  long-chain-fatty-acid--CoA ligase 6 isoform X1

    UniProtKB/TrEMBL
    A0A4W6E8V0, A0A4W6E8Y1

  2. XM_051078811.1 → XP_050934768.1  long-chain-fatty-acid--CoA ligase 6 isoform X1

    UniProtKB/TrEMBL
    A0A4W6E8V0, A0A4W6E8Y1
    Related
    ENSLCAP00010033547.1, ENSLCAT00010034341.2

  3. XM_018691607.2 → XP_018547123.1  long-chain-fatty-acid--CoA ligase 6 isoform X1

    UniProtKB/TrEMBL
    A0A4W6E8V0, A0A4W6E8Y1

  4. XM_051078812.1 → XP_050934769.1  long-chain-fatty-acid--CoA ligase 6 isoform X1

    UniProtKB/TrEMBL
    A0A4W6E8V0, A0A4W6E8Y1

  5. XM_018691608.2 → XP_018547124.1  long-chain-fatty-acid--CoA ligase 6 isoform X2

    UniProtKB/TrEMBL
    A0A4W6E932, A0AAJ7Q5F9
    Related
    ENSLCAP00010033753.2, ENSLCAT00010034556.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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