U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC108890975 protein pitchfork [ Lates calcarifer (barramundi perch) ]

Gene ID: 108890975, updated on 1-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LOC108890975
Gene description
protein pitchfork
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
pifo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG6
Exon count:
5
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG6 NC_066838.1 (24014671..24017364, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364657.1 (315631..318302)

Linkage Group LG6 - NC_066838.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127142584 Neighboring gene G0/G1 switch 2 Neighboring gene TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor Neighboring gene V-type proton ATPase subunit S1 Neighboring gene GDP dissociation inhibitor 1 Neighboring gene inter-alpha-trypsin inhibitor heavy chain family member 6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytoskeletal protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell projection organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein pitchfork
Names
primary cilia formation

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066838.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    24014671..24017364 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018688069.2 → XP_018543585.1  protein pitchfork

    UniProtKB/TrEMBL
    A0A4W6DEU9, A0AAJ7VAK9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.