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angpt1 angiopoietin 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108889570, updated on 1-Aug-2024

Summary

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Gene symbol
angpt1
Gene description
angiopoietin 1
See related
EnsemblRapid:ENSLCAG00010012999
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
10
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG3 NC_066835.1 (16418753..16468913, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364440.1 (269364..339675, complement)

Linkage Group LG3 - NC_066835.1Genomic Context describing neighboring genes Neighboring gene zymogen granule membrane protein 16-like Neighboring gene actin binding Rho activating protein b Neighboring gene uncharacterized LOC108889572 Neighboring gene uncharacterized LOC108889569 Neighboring gene syndecan 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Tie signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
angiopoietin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066835.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    16418753..16468913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018686093.2 → XP_018541609.1  angiopoietin-1 isoform X1

    UniProtKB/TrEMBL
    A0A4W6DS25
    Related
    ENSLCAP00010027651.1, ENSLCAT00010028253.2

  2. XM_051067984.1 → XP_050923941.1  angiopoietin-1 isoform X2

    UniProtKB/TrEMBL
    A0AAJ8B068
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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