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ercc5 excision repair cross-complementation group 5 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108888020, updated on 10-Apr-2024

Summary

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Gene symbol
ercc5
Gene description
excision repair cross-complementation group 5
See related
EnsemblRapid:ENSLCAG00010010310
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG2
Exon count:
15
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG2 NC_066834.1 (4636543..4644229)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364165.1 (7658245..7665983, complement)

Linkage Group LG2 - NC_066834.1Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 10C, mitochondrial RNase P subunit Neighboring gene basic leucine zipper nuclear factor 1 Neighboring gene uncharacterized LOC127143068 Neighboring gene uncharacterized LOC127143066 Neighboring gene methyltransferase like 21e Neighboring gene uncharacterized LOC108888026 Neighboring gene uncharacterized LOC108888033

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA excision repair protein ERCC-5
Names
ERCC excision repair 5, endonuclease

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066834.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    4636543..4644229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018683821.2 → XP_018539337.1  DNA excision repair protein ERCC-5

    UniProtKB/TrEMBL
    A0A4W6D9U5
    Related
    ENSLCAP00010080757.1, ENSLCAT00010091167.1
Nucleotide Protein
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Gene LinkOut

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