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niban1a niban apoptosis regulator 1a [ Lates calcarifer (barramundi perch) ]

Gene ID: 108883468, updated on 12-Sep-2024

Summary

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Gene symbol
niban1a
Gene description
niban apoptosis regulator 1a
See related
EnsemblRapid:ENSLCAG00010009219
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Also known as
niban1; fam129a
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG17
Exon count:
14
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG17 NC_066849.1 (26806374..26830384, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363825.1 (614152..638310)

Linkage Group LG17 - NC_066849.1Genomic Context describing neighboring genes Neighboring gene golgin, rab6-interacting Neighboring gene N-terminal Xaa-Pro-Lys N-methyltransferase Neighboring gene kinesin-associated protein 3a Neighboring gene interferon-induced protein with tetratricopeptide repeats 1 Neighboring gene tRNA methyltransferase 1-like Neighboring gene pre-mRNA processing factor 38A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein Niban 1a
Names
family with sequence similarity 129 member A
niban apoptosis regulator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066849.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    26806374..26830384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018676663.2 → XP_018532179.1  protein Niban 1a

    UniProtKB/TrEMBL
    A0A4W6D3Z5, A0A4W6D449
    Related
    ENSLCAP00010019560.2, ENSLCAT00010019976.2
Nucleotide Protein
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Gene LinkOut

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