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elp6 elongator acetyltransferase complex subunit 6 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108883194, updated on 10-Apr-2024

Summary

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Gene symbol
elp6
Gene description
elongator acetyltransferase complex subunit 6
See related
EnsemblRapid:ENSLCAG00010005331
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
7
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG15 NC_066847.1 (3272647..3275973, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363887.1 (951379..954705, complement)

Linkage Group LG15 - NC_066847.1Genomic Context describing neighboring genes Neighboring gene GA-binding protein subunit beta-1-like Neighboring gene protein tyrosine phosphatase, non-receptor type 23, a Neighboring gene SREBF chaperone Neighboring gene chondroitin sulfate proteoglycan 5a Neighboring gene uncharacterized LOC108883198 Neighboring gene homeodomain-interacting protein kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of elongator holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongator complex protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066847.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    3272647..3275973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018676113.1 → XP_018531629.1  elongator complex protein 6

    UniProtKB/TrEMBL
    A0A4W6CHE5
    Related
    ENSLCAP00010011236.1, ENSLCAT00010011480.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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