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syt12 synaptotagmin XII [ Lates calcarifer (barramundi perch) ]

Gene ID: 108883042, updated on 10-Apr-2024

Summary

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Gene symbol
syt12
Gene description
synaptotagmin XII
See related
EnsemblRapid:ENSLCAG00010006739
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG10
Exon count:
8
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG10 NC_066842.1 (6347885..6371227)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363883.1 (1439739..1463079)

Linkage Group LG10 - NC_066842.1Genomic Context describing neighboring genes Neighboring gene high mobility group 20A Neighboring gene pseudopodium-enriched atypical kinase 1 Neighboring gene dispanin subfamily A member 2b Neighboring gene catalase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-12
Names
synaptotagmin 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066842.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    6347885..6371227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018675906.2 → XP_018531422.1  synaptotagmin-12

    UniProtKB/TrEMBL
    A0A4W6CP43
    Related
    ENSLCAP00010014172.1, ENSLCAT00010014475.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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