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rnf13 ring finger protein 13 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108881240, updated on 10-Apr-2024

Summary

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Gene symbol
rnf13
Gene description
ring finger protein 13
See related
EnsemblRapid:ENSLCAG00010010101
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See rnf13 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
10
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG17 NC_066849.1 (15780508..15823952)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363859.1 (2729261..2772707, complement)

Linkage Group LG17 - NC_066849.1Genomic Context describing neighboring genes Neighboring gene arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 2 Neighboring gene protein ANKUB1 Neighboring gene profilin 2b Neighboring gene uncharacterized LOC127143485

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066849.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    15780508..15823952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018673104.2 → XP_018528620.1  E3 ubiquitin-protein ligase RNF13

    UniProtKB/TrEMBL
    A0A4W6D999, A0A4W6D9I4
    Related
    ENSLCAP00010021418.2, ENSLCAT00010021887.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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