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map3k3 mitogen-activated protein kinase kinase kinase 3 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108880564, updated on 1-Aug-2024

Summary

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Gene symbol
map3k3
Gene description
mitogen-activated protein kinase kinase kinase 3
See related
EnsemblRapid:ENSLCAG00010005970
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG11
Exon count:
17
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG11 NC_066843.1 (3529499..3547919, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367598.1 (679120..697541, complement)

Linkage Group LG11 - NC_066843.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 6a Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene glial fibrillary acidic protein Neighboring gene uncharacterized LOC108880567 Neighboring gene LIM domain containing 2 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box helicase 42

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066843.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    3529499..3547919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018672128.2 → XP_018527644.1  LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 3

    UniProtKB/TrEMBL
    A0A4W6CEY6, A0AAJ7LNZ1
    Related
    ENSLCAP00010012632.2, ENSLCAT00010012909.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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