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plxna4 plexin A4 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108879634, updated on 1-Aug-2024

Summary

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Gene symbol
plxna4
Gene description
plexin A4
See related
EnsemblRapid:ENSLCAG00010001001
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG18
Exon count:
34
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG18 NC_066850.1 (6265367..6492951, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367350.1 (318328..545912, complement)

Linkage Group LG18 - NC_066850.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) Neighboring gene nuclear respiratory factor 1 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 3a Neighboring gene exocyst complex component 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plexin-A4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066850.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    6265367..6492951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018670976.1 → XP_018526492.1  plexin-A4

    UniProtKB/TrEMBL
    A0A4W6BZD4, A0AAJ7LLE1
    Related
    ENSLCAP00010004901.2, ENSLCAT00010005029.2

  2. XM_018670973.1 → XP_018526489.1  plexin-A4

    UniProtKB/TrEMBL
    A0A4W6BZD4, A0AAJ7LLE1

  3. XM_018670971.1 → XP_018526487.1  plexin-A4

    UniProtKB/TrEMBL
    A0A4W6BZD4, A0AAJ7LLE1

  4. XM_018670972.1 → XP_018526488.1  plexin-A4

    UniProtKB/TrEMBL
    A0A4W6BZD4, A0AAJ7LLE1
    Related
    ENSLCAP00010004697.1, ENSLCAT00010004820.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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