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LOC108878425 tetratricopeptide repeat protein 28 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108878425, updated on 1-Aug-2024

Summary

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Gene symbol
LOC108878425
Gene description
tetratricopeptide repeat protein 28
See related
EnsemblRapid:ENSLCAG00010027390
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
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Genomic context

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Location:
chromosome: LG13
Exon count:
26
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG13 NC_066845.1 (15076395..15233762, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367222.1 (8901365..9058709)

Linkage Group LG13 - NC_066845.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer protein Neighboring gene meningioma 1b Neighboring gene L-serine dehydratase/L-threonine deaminase Neighboring gene probable E3 ubiquitin-protein ligase HECTD4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066845.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    15076395..15233762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018669105.2 → XP_018524621.1  tetratricopeptide repeat protein 28 isoform X1

    UniProtKB/TrEMBL
    A0A4W6G4W4, A0A4W6G5H4
    Related
    ENSLCAP00010058826.1, ENSLCAT00010060429.2

  2. XM_018669106.2 → XP_018524622.1  tetratricopeptide repeat protein 28 isoform X2

    UniProtKB/TrEMBL
    A0A4W6G5H4, A0A4W6G7S4
    Related
    ENSLCAP00010058832.1, ENSLCAT00010060435.2

  3. XM_018669107.2 → XP_018524623.1  tetratricopeptide repeat protein 28 isoform X3

    UniProtKB/TrEMBL
    A0A4W6G5V4, A0AAJ7LKX3
    Related
    ENSLCAP00010058846.2, ENSLCAT00010060449.2
Nucleotide Protein
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